Post-genome Knowledge Discovery

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Workshop on Bioinformatics and Genomics: Methods, Data, and Predictions

Jointly organized by Institute for Mathematical Sciences (IMS) and Laboratories for Information Technology (LIT)

THE WORKSHOP TIMETABLE

Monday: June 24, 2002
13:30-13:35	Limsoon Wong	Welcome Address
13:35-15:35	Alexander Kel	In silico prediction of gene regulation. Composite clusters of TF binding sites Alexander Kel, Olga Kel-Margoulis, Edgar Wingender
15:35-15:50		Tea break
15:50-17:00	Olga Kel-Margoulis	Databases on eukaryotic gene expression: data collection, processing, and application for analysis O. Kel-Margoulis, V. Matys, C. Choi, E. Goessling, N. Voss, I. Reuter, A. Kel, and E. Wingender*

Tuesday: June 25, 2002
13:00-14:30	Artemis Hatzigeorgiou	Analysis of EST's: The state of the art Artemis G. Hatzigeorgiou
14:30-15:00	Chin-Yo Lin	Dissecting the Estrogen Response of Breast Cancer Cells by Microarray Analysis and Promoter Mining Chin-Yo Lin
15:00-15:15		Tea break
15:15-15:45	Alan Christofells	Evolutionary rearrangements between the Fugu and Human genomes Alan Christoffels
15:45-16:15	Suisheng Tang	Dystrophin gene structure and sequence comparison between human and fugu fish Suisheng Tang and Han Hao
16:15-16:45	Judice Koh	BioWare as a tool for constructing and managing annotated collections of DNA sequences. Judice Koh, Vladimir Brusic

Wednesday: June 26, 2002
09:00-09:30	Ameya Virkar	Self-organizing neural networks as filters of clean start codons Ameya Virkar, Guolinag Li, Kunal Agrawal, Hwey Ting, Han Hao, Suisheng Tang, Vladimir B Bajic
09:30-10:00	Alen Chong	Extraction of large quantity of gene start regions and start codon regions from human genome - fie tool Alen Chong and Guanglan Zhang
10:30-11:00	Kunal Agrawal	Splice site recognition by support vector machines Kunal Agrawal, Ameya Virkar, Guolinag Li, Hwey Ting, Han Hao, Suisheng Tang, Vladimir B Bajic
11:00-11:15		Tea break
11:15:11:45	T. K. B. Lee	MGAlign, a tool for aligning mRNA Sequences to Genomic Sequences T. K. B. Lee, T. W. Tan, H. P. Too, S. Ranganathan
11:45-12:15	Vladimir Bajic	Which transcription regulatory patterns are most represented in human promoters Vladimir B Bajic